Projects & Data

Zika virus Phylogeography

Phylogeographical analysis of Zika virus spread.

West Nile virus Genomics

West Nile virus sequences from California (and beyond).

HLA Typing from Ebola and Lassa Patients

HLA genotype calls from Ebola and Lassa patients admitted in Sierra Leone.

Zika Florida Genomics

Sequence data from the Zika virus outbreak in Florida – mostly local cases from humans and mosquitoes, but also some travel-associated cases.

Zika Case Numbers

We’re compiling Zika case numbers from endemic countries. Our data is based on bar graphs reported and compiled by PAHO.

Dengue Florida Genomics

Full-length dengue virus genomes from the 2013 outbreak in Martin County, Florida.

Links

GitHub Commits

Recent Data-related Blog Posts

Hidden Zika outbreak

| Data | No Comments
Summary: Using local and travel-associated case reporting from American and European public health systems, we identified an unreported Zika outbreak in Cuba during 2017. Virus sequencing from travelers revealed that the Zika outbreak in Cuba was sparked by multiple introductions of the virus from elsewhere in the Caribbean and Central America during 2016 that persisted into 2017. The recent Zika virus…

PAHO Zika numbers

| Data, News | No Comments
Data here. Permanent Andersen Lab project link is here. Most epidemiological investigations of Zika virus during the current epidemic in the Americas requires temporal human case data. The only place to gather this information is is from the Pan American Health Organization (PAHO), an arm of the World Health Organization. They present Zika virus case numbers in two ways: spreadsheets of…

Zika sequences from Miami mosquitoes

| Data, News | No Comments
Data here. Protocol here. Three pools of Aedes aegypti mosquitoes collected in Miami Beach on August 22nd and 23rd, 2016, were found to be infected with Zika virus. Through our collaborators, Scott Michael and Sharon Isern from Florida Gulf Coast University, we recently received samples of these mosquitoes for sequencing using our amplicon-based protocol for MiSeq. (more…)