Moo Flu Genomics
Functional evolution of H5N1 clade 2.3.4.4b in cattle, birds, and other animals.
SARS-CoV-2 Evolution
Investigations of the origin and evolution of SARS-CoV-2.
SARS-CoV-2 Genomics
Genome sequencing of SARS-CoV-2 from COVID-19 patients.
West Nile Genomics – WestNile 4K
West Nile virus sequences from across the United States.
Software and Resources
Archived Projects
Bat Metagenomics
Metagenomic survey of bats from Uganda. The anti-PREDICT Project.
Dengue Florida Genomics
Full-length dengue virus genomes from the 2013 outbreak in Martin County, Florida.
Ebola Epidemiology
Epidemiological data for the 2021 Ebola outbreak in the DRC.
HLA Typing from Ebola and Lassa Patients
HLA genotype calls from Ebola and Lassa patients admitted in Sierra Leone.
SARS-CoV-1 Evolution
Investigations of the origin and evolution of SARS-CoV-1.
Zika Epidemiology
We’re compiling Zika case numbers from endemic countries. Our data is based on bar graphs reported and compiled by PAHO.
Zika Functional Evolution
Experimental studies testing Zika virus evolution.
Zika Genomics
Sequence data from the Zika virus outbreak in Florida and beyond – mostly local cases from humans and mosquitoes, but also travel-associated cases.
Zika Phylogeography
Phylogeographical analysis of Zika virus spread.
West Nile Genomics – California
West Nile virus sequences from California.
